Source code for menpofit.sdm.algorithm.nonparametric

from functools import partial

from menpo.feature import no_op

from menpofit.result import MultiScaleNonParametricIterativeResult
from menpofit.error import euclidean_bb_normalised_error
from menpofit.math import (IIRLRegression, IRLRegression, PCRRegression,
                           OptimalLinearRegression, OPPRegression)

from .base import (BaseSupervisedDescentAlgorithm,
                   compute_non_parametric_delta_x, features_per_image,
                   features_per_patch, update_non_parametric_estimates,
                   print_non_parametric_info, fit_non_parametric_shape)


class NonParametricSDAlgorithm(BaseSupervisedDescentAlgorithm):
    r"""
    Abstract class for training a non-parametric cascaded-regression Supervised
    Descent algorithm.
    """
    def __init__(self):
        super(NonParametricSDAlgorithm, self).__init__()
        self.regressors = []

    @property
    def _multi_scale_fitter_result(self):
        # The result class to be used by a multi-scale fitter
        return MultiScaleNonParametricIterativeResult

    def _compute_delta_x(self, gt_shapes, current_shapes):
        return compute_non_parametric_delta_x(gt_shapes, current_shapes)

    def _update_estimates(self, estimated_delta_x, delta_x, gt_x,
                          current_shapes):
        update_non_parametric_estimates(estimated_delta_x, delta_x, gt_x,
                                        current_shapes)

    def _compute_training_features(self, images, gt_shapes, current_shapes,
                                   prefix='', verbose=False):
        return features_per_image(images, current_shapes, self.patch_shape,
                                  self.patch_features, prefix=prefix,
                                  verbose=verbose)

    def _compute_test_features(self, image, current_shape):
        return features_per_patch(image, current_shape,
                                  self.patch_shape, self.patch_features)

    def run(self, image, initial_shape, gt_shape=None, return_costs=False,
            **kwargs):
        r"""
        Run the algorithm to an image given an initial shape.

        Parameters
        ----------
        image : `menpo.image.Image` or subclass
            The image to be fitted.
        initial_shape : `menpo.shape.PointCloud`
            The initial shape from which the fitting procedure will start.
        gt_shape : class : `menpo.shape.PointCloud` or ``None``, optional
            The ground truth shape associated to the image.
        return_costs : `bool`, optional
            If ``True``, then the cost function values will be computed
            during the fitting procedure. Then these cost values will be
            assigned to the returned `fitting_result`. *Note that this
            argument currently has no effect and will raise a warning if set
            to ``True``. This is because it is not possible to evaluate the
            cost function of this algorithm.*

        Returns
        -------
        fitting_result: :map:`NonParametricIterativeResult`
            The result of the fitting procedure.
        """
        return fit_non_parametric_shape(image, initial_shape, self,
                                        gt_shape=gt_shape,
                                        return_costs=return_costs)

    def _print_regression_info(self, template_shape, gt_shapes, n_perturbations,
                               delta_x, estimated_delta_x, level_index,
                               prefix=''):
        print_non_parametric_info(template_shape, gt_shapes, n_perturbations,
                                  delta_x, estimated_delta_x, level_index,
                                  self._compute_error, prefix=prefix)


[docs]class NonParametricNewton(NonParametricSDAlgorithm): r""" Class for training a non-parametric cascaded-regression algorithm using Incremental Regularized Linear Regression (:map:`IRLRegression`). Parameters ---------- patch_features : `callable`, optional The features to be extracted from the patches of an image. patch_shape : `(int, int)`, optional The shape of the extracted patches. n_iterations : `int`, optional The number of iterations (cascades). compute_error : `callable`, optional The function to be used for computing the fitting error when training each cascade. alpha : `float`, optional The regularization parameter. bias : `bool`, optional Flag that controls whether to use a bias term. """ def __init__(self, patch_features=no_op, patch_shape=(17, 17), n_iterations=3, compute_error=euclidean_bb_normalised_error, alpha=0, bias=True): super(NonParametricNewton, self).__init__() self._regressor_cls = partial(IRLRegression, alpha=alpha, bias=bias) self.patch_shape = patch_shape self.patch_features = patch_features self.n_iterations = n_iterations self._compute_error = compute_error
[docs]class NonParametricGaussNewton(NonParametricSDAlgorithm): r""" Class for training a non-parametric cascaded-regression algorithm using Indirect Incremental Regularized Linear Regression (:map:`IIRLRegression`). Parameters ---------- patch_features : `callable`, optional The features to be extracted from the patches of an image. patch_shape : `(int, int)`, optional The shape of the extracted patches. n_iterations : `int`, optional The number of iterations (cascades). compute_error : `callable`, optional The function to be used for computing the fitting error when training each cascade. alpha : `float`, optional The regularization parameter. bias : `bool`, optional Flag that controls whether to use a bias term. alpha2 : `float`, optional The regularization parameter of the Hessian matrix. """ def __init__(self, patch_features=no_op, patch_shape=(17, 17), n_iterations=3, compute_error=euclidean_bb_normalised_error, alpha=0, bias=True, alpha2=0): super(NonParametricGaussNewton, self).__init__() self._regressor_cls = partial(IIRLRegression, alpha=alpha, bias=bias, alpha2=alpha2) self.patch_shape = patch_shape self.patch_features = patch_features self.n_iterations = n_iterations self._compute_error = compute_error
[docs]class NonParametricPCRRegression(NonParametricSDAlgorithm): r""" Class for training a non-parametric cascaded-regression algorithm using Principal Component Regression (:map:`PCRRegression`). Parameters ---------- patch_features : `callable`, optional The features to be extracted from the patches of an image. patch_shape : `(int, int)`, optional The shape of the extracted patches. n_iterations : `int`, optional The number of iterations (cascades). compute_error : `callable`, optional The function to be used for computing the fitting error when training each cascade. variance : `float` or ``None``, optional The SVD variance. bias : `bool`, optional Flag that controls whether to use a bias term. """ def __init__(self, patch_features=no_op, patch_shape=(17, 17), n_iterations=3, compute_error=euclidean_bb_normalised_error, variance=None, bias=True): super(NonParametricPCRRegression, self).__init__() self._regressor_cls = partial(PCRRegression, variance=variance, bias=bias) self.patch_shape = patch_shape self.patch_features = patch_features self.n_iterations = n_iterations self._compute_error = compute_error
[docs]class NonParametricOptimalRegression(NonParametricSDAlgorithm): r""" Class for training a non-parametric cascaded-regression algorithm using Multivariate Linear Regression with optimal reconstructions (:map:`OptimalLinearRegression`). Parameters ---------- patch_features : `callable`, optional The features to be extracted from the patches of an image. patch_shape : `(int, int)`, optional The shape of the extracted patches. n_iterations : `int`, optional The number of iterations (cascades). compute_error : `callable`, optional The function to be used for computing the fitting error when training each cascade. variance : `float` or ``None``, optional The SVD variance. bias : `bool`, optional Flag that controls whether to use a bias term. """ def __init__(self, patch_features=no_op, patch_shape=(17, 17), n_iterations=3, compute_error=euclidean_bb_normalised_error, variance=None, bias=True): super(NonParametricOptimalRegression, self).__init__() self._regressor_cls = partial(OptimalLinearRegression, variance=variance, bias=bias) self.patch_shape = patch_shape self.patch_features = patch_features self.n_iterations = n_iterations self._compute_error = compute_error
[docs]class NonParametricOPPRegression(NonParametricSDAlgorithm): r""" Class for training a non-parametric cascaded-regression algorithm using Multivariate Linear Regression with Orthogonal Procrustes Problem reconstructions (:map:`OPPRegression`). Parameters ---------- patch_features : `callable`, optional The features to be extracted from the patches of an image. patch_shape : `(int, int)`, optional The shape of the extracted patches. n_iterations : `int`, optional The number of iterations (cascades). compute_error : `callable`, optional The function to be used for computing the fitting error when training each cascade. bias : `bool`, optional Flag that controls whether to use a bias term. """ def __init__(self, patch_features=no_op, patch_shape=(17, 17), n_iterations=3, compute_error=euclidean_bb_normalised_error, bias=True): super(NonParametricOPPRegression, self).__init__() self._regressor_cls = partial(OPPRegression, bias=bias) self.patch_shape = patch_shape self.patch_features = patch_features self.n_iterations = n_iterations self._compute_error = compute_error